The Whitewater River Run is a popular destination for kayakers and canoeists in Minnesota. The ideal streamflow range is between 150-1000 cfs, with 300-500 cfs being the optimal range for experienced paddlers. The river is rated as a Class II-III, with several rapids and obstacles throughout the 19-mile segment from the confluence of the Clearwater River to the northwestern corporate boundary of Anoka.

Some of the notable rapids include "Pinball", "Pinch", "Roller Coaster", and "Island Rapids". There are also several logjams and strainers that paddlers should be aware of. It is recommended that paddlers have at least intermediate-level skills and experience before attempting the Whitewater River Run.

The Minnesota Department of Natural Resources has specific regulations for the area, including a mandatory life jacket requirement, a prohibition on alcohol consumption, and a ban on camping within the first two miles of the segment. Additionally, paddlers should be aware of private property boundaries along the river.